Package: gen5helper 1.0.1
gen5helper: Processing 'Gen5' 2.06 Exported Data
A collection of functions for processing 'Gen5' 2.06 exported data. 'Gen5' is an essential data analysis software for BioTek plate readers <https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/>. This package contains functions for data cleaning, modeling and plotting using exported data from 'Gen5' version 2.06. It exports technically correct data defined in (Edwin de Jonge and Mark van der Loo (2013) <https://cran.r-project.org/doc/contrib/de_Jonge+van_der_Loo-Introduction_to_data_cleaning_with_R.pdf>) for customized analysis. It contains Boltzmann fitting for general kinetic analysis. See <https://www.github.com/yanxianUCSB/gen5helper> for more information, documentation and examples.
Authors:
gen5helper_1.0.1.tar.gz
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gen5helper.pdf |gen5helper.html✨
gen5helper/json (API)
| # Install 'gen5helper' in R: |
| install.packages('gen5helper', repos = c('https://ylin00.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ylin00/gen5helper/issues
Last updated 5 years agofrom:f24b9970b9. Checks:1 OK, 7 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 04 2025 |
| R-4.5-win | NOTE | Feb 04 2025 |
| R-4.5-mac | NOTE | Feb 04 2025 |
| R-4.5-linux | NOTE | Feb 04 2025 |
| R-4.4-win | NOTE | Feb 04 2025 |
| R-4.4-mac | NOTE | Feb 04 2025 |
| R-4.3-win | NOTE | Feb 04 2025 |
| R-4.3-mac | NOTE | Feb 04 2025 |
Exports:as.isBoltzmannfactor2numfit.boltzmanng5h.annotateg5h.clean2get.halftimemapvalues_most.freqnormalizerange_saveRDS_smooth.meanungroup_write.csv_
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnaturalsortnlmepillarpkgconfigplyrpracmapurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cast an object to match class of another object | as.is |
| Boltzmann model for fitting time series data | Boltzmann |
| this is a file for functions that are universally useful at common data manipulations Convert factor to numeric | factor2num |
| Fit readings with Boltzmann model | fit.boltzmann |
| Annotate a cleaned dataset | g5h.annotate |
| Clean Gen5 exported data | g5h.clean_ |
| Clean Gen5 exported data | g5h.clean2 |
| Add time intervals to cleaned dataset | g5h.set_time2 |
| gen5helper: A Collection of Functions for Processing Gen5 2.06 Exported Data | gen5helper-package gen5helper |
| Get half time by linear fitting | get.halftime |
| Map the unique values of a vector | mapvalues_ |
| Return most frequent numbers | most.freq |
| Scale a vector to 0-1 by min and max | normalize |
| Return range of a vector | range_ |
| saveRDS and return .data | saveRDS_ |
| Smooth a vector using moving average | smooth.mean |
| Run ungroup() and as.data.frame() | ungroup_ |
| write.csv without row.names | write.csv_ |
